/
ObsoletePlaziExamples.txt
603 lines (556 loc) · 44 KB
/
ObsoletePlaziExamples.txt
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
520
521
522
523
524
525
526
527
528
529
530
531
532
533
534
535
536
537
538
539
540
541
542
543
544
545
546
547
548
549
550
551
552
553
554
555
556
557
558
559
560
561
562
563
564
565
566
567
568
569
570
571
572
573
574
575
576
577
578
579
580
581
582
583
584
585
586
587
588
589
590
591
592
593
594
595
596
597
598
599
600
601
602
603
%META:TOPICINFO{author="TerryCatapano" date="1228105595" format="1.1" version="1.5"}%
%META:TOPICPARENT{name="PlaziEOLProject"}%
-- Main.BobMorris - 24 Sep 2008
---+++ Initial Example of 25 Aug 2008
<verbatim>
<?xml version="1.0"?>
<rdf:RDF
xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
xmlns="http://www.owl-ontologies.com/2008/7/1/Ontology1214964455.owl#"
xmlns:spmi="http://rs.tdwg.org/ontology/voc/SPMInfoItems#"
xmlns:tc="http://rs.tdwg.org/ontology/voc/TaxonConcept#"
xmlns:spm="http://rs.tdwg.org/ontology/voc/SpeciesProfileModel#"
xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
xmlns:tname="http://rs.tdwg.org/ontology/voc/TaxonName#"
xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
>
<spm:SpeciesProfileModel rdf:ID="Aus_Bus_Plazi_2008">
<spm:hasInformation>
<spmi:Description rdf:ID="Aus_Bus_Plazi_2008_Description">
<spm:hasContent xml:lang="la">lorem ipsum, quia dolor sit,
amet, consectetur, adipisci velit, sed quia non numquam eius modi
tempora\
incidunt, ut labore et dolore magnam aliquam quaerat voluptatem. Ut
enim ad minima veniam, quis nostrum exercitationem ullam corporis
susci\
pit laboriosam, nisi ut aliquid ex ea commodi consequatur? Quis autem
vel eum iure reprehenderit, qui in ea voluptate velit esse,
</spm:hasC\
ontent>
</spmi:Description>
</spm:hasInformation>
<spm:aboutTaxon>
<tc:TaxonConcept rdf:ID="Aus_Bus_Plazi_2008_TC">
<tc:nameString xml:lang="en">Aus Bus Plazi 2008</tc:nameString>
<tc:rankString xml:lang="en">Species</tc:rankString>
</tc:TaxonConcept>
</spm:aboutTaxon>
</spm:SpeciesProfileModel>
<tc:TaxonConcept rdf:ID="Aus_Bus_Plazi"/>
</rdf:RDF>
</verbatim>
-- Main.TerryCatapano - 25 Aug 2008
---+++ Sample result of stylesheet conversion: 6 Sep 2008
<verbatim>
<?xml version="1.0" encoding="UTF-8"?><rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:spmi="http://rs.tdwg.org/ontology/voc/SPMInfoItems#" xmlns:spm="http://rs.tdwg.org/ontology/voc/SpeciesProfileModel#" xmlns:tname="http://rs.tdwg.org/ontology/voc/TaxonName#" xmlns:tc="http://rs.tdwg.org/ontology/voc/TaxonConcept#" xmlns:tax="http://www.taxonx.org/schema/v1" xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#" xmlns:xsd="http://www.w3.org/2001/XMLSchema#" xmlns="http://www.owl-ontologies.com/2008/7/1/Ontology1214964455.owl#">
<spm:SpeciesProfileModel rdf:ID="urn:lsid:biosci.ohio-state.edu:osuc_concepts:186722">
<spm:hasInformation>
<spmi:Description rdf:ID="urn:lsid:biosci.ohio-state.edu:osuc_concepts:186722_Description_1">
<spm:hasContent>P. nigro-caeruleo-viridis, nitida et delicatule punctata; alis hyalinis.Female. Length 4 1 / 2 lines. Deep blue-green, with tints of purple in certain lights, particularly on the head, the clypeus with a central longitudinal ridge, its anterior margin slightly emarginate; the flagellum rufo-piceous beneath, the ocelli white. Thorax: the wings hyaline and brilliantly iridescent; the legs dark rufo-piceous with a bright purple tinge. Abdomen delicately punctured, the head and thorax more strongly so; the latter with a semicircular enclosed space at its base, which is smooth and shining.
</ spm:hasContent>
</spmi:Description>
</spm:hasInformation>
<spm:aboutTaxon>
<tc:TaxonConcept rdf:ID="urn:lsid:biosci.ohio-state.edu:osuc_concepts:186722">
<tc:nameString xml:lang="en">Prosopis malachisis</tc:nameString>
<tc:rankString xml:lang="en">Species</tc:rankString>
</tc:TaxonConcept>
</spm:aboutTaxon>
<tc:TaxonConcept rdf:ID="urn:lsid:biosci.ohio-state.edu:osuc_concepts:186722"/>
</spm:SpeciesProfileModel>
</rdf:RDF>
</verbatim>
---+++ New Proposal: 17 Sep 2008
based on reading of RDF Syntax Spec http://www.w3.org/TR/rdf-syntax-grammar
rdf:id's function is to reify triples and extends base url given in xml:base (which is the uri of the rdf doc?)
using rdf:about to specify that taxon concept LSID is the subject of the SPM
use rdf:resource to specify that the concept LSID is the concept of the about LSID -- not sure about this as it is recursive (A has concept A)?
This at least validates, however.
<verbatim>
<?xml version="1.0" encoding="UTF-8"?>
<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
xmlns:spmi="http://rs.tdwg.org/ontology/voc/SPMInfoItems#"
xmlns:spm="http://rs.tdwg.org/ontology/voc/SpeciesProfileModel#"
xmlns:tname="http://rs.tdwg.org/ontology/voc/TaxonName#"
xmlns:tc="http://rs.tdwg.org/ontology/voc/TaxonConcept#"
xmlns:tax="http://www.taxonx.org/schema/v1" xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
xmlns="http://www.owl-ontologies.com/2008/7/1/Ontology1214964455.owl#"
xml:base="http://plazi.org/10199/xxxx">
<spm:SpeciesProfileModel rdf:about="urn:lsid:biosci.ohio-state.edu:osuc_concepts:196242">
<spm:hasInformation>
<spmi:Description
rdf:ID="_Description_1">
<spm:hasContent>Figs. 14, 35-36.</spm:hasContent>
</spmi:Description>
</spm:hasInformation>
<spm:hasInformation>
<spmi:Description
rdf:ID="_Description_2">
<spm:hasContent>Worker description.- Head: Head rectangular; vertex planar or weakly
concave; frons ranging from shining, smooth with almost effaced reticulation to
shining and finely punctate-reticulate; pilosity of frons consisting of a few
short, thick, erect setae interspersed with short, appressed setulae. Eye
moderate, eye width 1-1.5x greatest width of antennal scape; (in full-face view)
eyes set at about midpoint of head capsule; (viewed in profile) eyes set around
midline of head capsule; eye elliptical, curvature of inner eye margin may be
more pronounced than that of its outer margin. Antennal segments 12; antennal
club three-segmented. Clypeal carinae indicated by multiple weak ridges;
etc...
</spm:hasContent>
</spmi:Description>
</spm:hasInformation>
<spm:aboutTaxon>
<tc:TaxonConcept rdf:ID="_Concept1" rdf:resource="urn:lsid:biosci.ohio-state.edu:osuc_concepts:196242 ">
<tc:nameString xml:lang="en">Monomorium clarinodis Heterick</tc:nameString>
<tc:rankString xml:lang="en">Species</tc:rankString>
</tc:TaxonConcept>
</spm:aboutTaxon>
</spm:SpeciesProfileModel>
</rdf:RDF>
</verbatim>
---++ Deprecation of tc:rankString
---+++ Example of 23 September 2008
Some changes:
* SPM doc itself is subject of spm:SpeciesProfileModel (via xml:base)
* no non-referenced namespace declarations
* an spmi:Description now for each *paragraph* under a tax:Description element
* spm:aboutTaxon now includes tc:hasInformation with LSID of concept as value of rdf:resource
* use "en" for "nomenclatural language"?
However, this example uses a deprecated treatment of rank.
[[http://rs.tdwg.org/ontology/voc/TaxonConcept#TaxonConcept][see wiki page]]
<blockquote>
*Deprecated* The taxonomic rank of this concept as a string. A string representation of the rank of this concept. It is highly recommended that the rank property be used along with this one unless the correct rank is not available in the rank vocabulary. No direct equivalent in TCS but is string version of /DataSet/TaxonConcepts/TaxonConcept/Rank. Requested by data suppliers. After discussions between a number of parties this property is considered to be deprecated. The rank of a TaxonConcept should be indicated by including a TaxonName of the appropriate rank in the hasName property even if the name object is empty apart from the rank.
</blockquote>
---
<verbatim>
<?xml version="1.0" encoding="UTF-8"?>
<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
xmlns:spmi="http://rs.tdwg.org/ontology/voc/SPMInfoItems#"
xmlns:spm="http://rs.tdwg.org/ontology/voc/SpeciesProfileModel#"
xmlns:tname="http://rs.tdwg.org/ontology/voc/TaxonName#"
xmlns:tc="http://rs.tdwg.org/ontology/voc/TaxonConcept#"
xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#" xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
xmlns="http://www.owl-ontologies.com/2008/7/1/Ontology1214964455.owl#" xml:base="">
<spm:SpeciesProfileModel rdf:ID="spm_1">
<spm:hasInformation>
<spmi:Description rdf:ID="_Description_1_1_1">
<spm:hasContent>[[ soldier ]]. Very pale dirty yellow, head reddish yellow,
mandibles dark red, teeth, scapes, anterior border of clypeus, and extreme
anterior angles of cheeks black, clothed with very sparse outstanding longer and
shorter yellow hairs and some fine very short decumbent yellow hairs. Sculpture
consisting of very fine reticulations, a little stronger on
head.</spm:hasContent>
</spmi:Description>
</spm:hasInformation>
<spm:hasInformation>
<spmi:Description rdf:ID="_Description_1_1_2">
<spm:hasContent>Head large, triangular, considerably broader behind than in front,
broadest a little before posterior angles, which are rounded and prominent,
posterior border excised, slightly sinuate on each side; mandibles massive,
strongly punctured and with transverse ridges, masticatory border armed with six
etc...</spm:hasContent>
</spmi:Description>
</spm:hasInformation>
<spm:hasInformation>
<spmi:Description rdf:ID="_Description_1_1_3">
<spm:hasContent>[[ worker ]] Of the same pale colour as the [[ soldier ]]. but only
the extreme anterior angle of clypens and cheeks blackish; the mandibles are
pale yellow with the teeth red. The sculpture and hairs are similar.</spm:hasContent>
</spmi:Description>
</spm:hasInformation>
<spm:hasInformation>
<spmi:Description rdf:ID="_Description_1_1_4">
<spm:hasContent>Head long, narrow, broader in front than behind, broadest a little
in front of sides of head, narrowed, rather sharply behind eyes to base; teeth
to mandibles somewhat more slender and sharper, carinae on clypeus a little more
pronounced; eyes more prominent. Thorax narrow and slender; pronotum more
narrowed to apex. Scale of petiole of similar shape, but a little narrower;
gaster and-legs of similar shape. Long. 10 - 12 mm.</spm:hasContent>
</spmi:Description>
</spm:hasInformation>
<spm:aboutTaxon>
<tc:TaxonConcept rdf:ID="_tc1">
<tc:nameString xml:lang="en">Camponotus (Tanaemyrmex) gerberti</tc:nameString>
<tc:rankString xml:lang="en">Species</tc:rankString>
<tc:hasInformation
rdf:resource="urn:lsid:biosci.ohio-state.edu:osuc_concepts:135414"/>
</tc:TaxonConcept>
</spm:aboutTaxon>
</spm:SpeciesProfileModel>
<spm:SpeciesProfileModel rdf:ID="spm_2">
<spm:hasInformation>
<spmi:Description rdf:ID="_Description_2_1_1">
<spm:hasContent> Very like trispinosus but without the two shorter spines on the
mesonotum. The sculpture is different, and the species is also a little darker
in colour. </spm:hasContent>
</spmi:Description>
</spm:hasInformation>
<spm:hasInformation>
<spmi:Description rdf:ID="_Description_2_1_2">
<spm:hasContent>[[ worker ]]. Head: the sculpture is quite different; the disc is
smooth and shining, from the outer part of the smooth surface at sides
semicircular carinae run on each side along the cheeks, and from the posterior
part a few weaker carinae extend towards base of head, the space between these
and the posterior border of head being smooth and shining.</spm:hasContent>
</spmi:Description>
</spm:hasInformation>
<spm:hasInformation>
<spmi:Description rdf:ID="_Description_2_1_3">
<spm:hasContent>Thorax: the ridges on the pronotum are considerably less marked; the
mesonotum is smooth and shining and there are no spines present. The ridges on
the sides of the thorax are less marked; the dorsal surface and the declivity of
the epinotum are smooth and shining.</spm:hasContent>
</spmi:Description>
</spm:hasInformation>
<spm:hasInformation>
<spmi:Description rdf:ID="_Description_2_1_4">
<spm:hasContent>The spines on the pronotum are slightly longer and stronger, and
those of the epinotum, being of a different shape, being slightly shorter, and
projecting outwards then inwards in an even curve. Long. 5 mm.</spm:hasContent>
</spmi:Description>
</spm:hasInformation>
<spm:aboutTaxon>
<tc:TaxonConcept rdf:ID="_tc2">
<tc:nameString xml:lang="en">Dodous bispinosus</tc:nameString>
<tc:rankString xml:lang="en">Species</tc:rankString>
<tc:hasInformation
rdf:resource="urn:lsid:biosci.ohio-state.edu:osuc_concepts:143647"/>
</tc:TaxonConcept>
</spm:aboutTaxon>
</spm:SpeciesProfileModel>
etc...
</rdf:RDF>
</verbatim>
---+++ Example of 24 September 2008
* With proper handling of rank.
* hasContent now for each Description section, not each Paragraph in the Description
[[http://www.w3.org/RDF/Validator/ARPServlet?URI=http://plazi.cs.umb.edu:8180/exist/rest/db/taxonx_docs/5959_tx1.xml?_xsl=styles/tx2spm.xsl&PARSE=Parse+URI%3A+&TRIPLES_AND_GRAPH=PRINT_BOTH&FORMAT=PNG_EMBED][For validation, triples and graph of the *current* version (i.e., not necessarily the same as the example below) at W3C online validator]]
<verbatim>
<?xml version="1.0" encoding="UTF-8"?>
<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
xmlns:spmi="http://rs.tdwg.org/ontology/voc/SPMInfoItems#"
xmlns:spm="http://rs.tdwg.org/ontology/voc/SpeciesProfileModel#"
xmlns:tn="http://rs.tdwg.org/ontology/voc/TaxonName#" xmlns:tc="http://rs.tdwg.org/ontology/voc/TaxonConcept#"
xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
xmlns:xsd="http://www.w3.org/2001/XMLSchema#" xmlns="http://www.owl-ontologies.com/2008/7/1/Ontology1214964455.owl#"
xml:base="">
<spm:SpeciesProfileModel rdf:ID="spm_1">
<spm:hasInformation>
<spmi:Description rdf:ID="_Description_1_1">
<spm:hasContent>[[ soldier ]]. Very pale dirty yellow, head reddish yellow, mandibles dark red, teeth,
scapes, anterior border of clypeus, and extreme anterior angles of cheeks black, clothed with very
sparse outstanding longer and shorter yellow hairs and some fine very short decumbent yellow hairs.
Sculpture consisting of very fine reticulations, a little stronger on head.Head large, triangular,
considerably broader behind than in front, broadest a little before posterior angles, which are
rounded and prominent, posterior border excised, slightly sinuate on each side; mandibles massive,
strongly punctured and with transverse ridges, masticatory border armed with six large strong teeth,
the apical one being the longest, curved and sharp, the next two longer and sharper than the last
three; clypeus large, somewhat flat, carinate and slightly convex on disc, anterior border
considerably produced in middle where it is somewhat crenulate, and five large punctures are present
along the edge, and smaller punctures, rather wide apart, are scattered over the rest of the
surface, posterior border excised in middle; frontal area very faintly defined; frontal carinas
rather long, raised, with sharp edges, the rims or edges enclosing the antennal sockets are
considerably raised and prominent; a very fine narrow longitudinal ridge takes the place of the
frontal furrow and extends between the frontal carinae as far back as their extreme edges; eyes
large, broad oval, rather flat, are situated rather high up before the middle of the sides of the
head; antenna 12 - jointcd, scape long, thickened at apex, extending beyond the posterior border of
head funiculus with all the joints elongate, first slightly shorter than the others, last joint long
and pointed. Thorax longer than broad, broadest behind centre of sides of pronotum, somewhat slender
behind; pronotum ample. convex, with a short neck, sides margined, considerably widened afterneck,
posterior border semicircular; sutures between pro- and mesonotum, and meso- and epinotum fine but
distinct; mesonotum longer than broad, shorter than pronotum, somewhat flat on disc, sides rather
straight, epinotum longer than mesonotum, sides rather straight, angle between dorsal surface and
declivity not marked, dorsal surface longer than declivity. Scale of petiole rather thick at base,
anterior surface slightly convex, posterior surface slightly concave, upper surface narrow and
forming a rather sharp, ridge; gaster oval, not very voluminous, pointed at apex. Legs fairly long;
tibiae prismatic. Long. 18 mm.[[ worker ]] Of the same pale colour as the [[ soldier ]]. but only
the extreme anterior angle of clypens and cheeks blackish; the mandibles are pale yellow with the
teeth red. The sculpture and hairs are similar.Head long, narrow, broader in front than behind,
broadest a little in front of sides of head, narrowed, rather sharply behind eyes to base; teeth to
mandibles somewhat more slender and sharper, carinae on clypeus a little more pronounced; eyes more
prominent. Thorax narrow and slender; pronotum more narrowed to apex. Scale of petiole of similar
shape, but a little narrower; gaster and-legs of similar shape. Long. 10 - 12 mm.</spm:hasContent>
</spmi:Description>
</spm:hasInformation>
<spm:aboutTaxon>
<tc:TaxonConcept rdf:ID="_tc1">
<tc:nameString xml:lang="en">Camponotus (Tanaemyrmex) gerberti</tc:nameString>
<tc:hasInformation rdf:resource="urn:lsid:biosci.ohio-state.edu:osuc_concepts:135414"/>
<tc:hasName>
<tn:TaxonName rdf:ID="_tn1">
<tn:rankString xml:lang="en">Species</tn:rankString>
</tn:TaxonName>
</tc:hasName>
</tc:TaxonConcept>
</spm:aboutTaxon>
</spm:SpeciesProfileModel>
<spm:SpeciesProfileModel rdf:ID="spm_2">
<spm:hasInformation>
<spmi:Description rdf:ID="_Description_2_1">
<spm:hasContent> Very like trispinosus but without the two shorter spines on the mesonotum. The
sculpture is different, and the species is also a little darker in colour. [[ worker ]]. Head: the
sculpture is quite different; the disc is smooth and shining, from the outer part of the smooth
surface at sides semicircular carinae run on each side along the cheeks, and from the posterior part
a few weaker carinae extend towards base of head, the space between these and the posterior border
of head being smooth and shining.Thorax: the ridges on the pronotum are considerably less marked;
the mesonotum is smooth and shining and there are no spines present. The ridges on the sides of the
thorax are less marked; the dorsal surface and the declivity of the epinotum are smooth and
shining.The spines on the pronotum are slightly longer and stronger, and those of the epinotum,
being of a different shape, being slightly shorter, and projecting outwards then inwards in an even
curve. Long. 5 mm.</spm:hasContent>
</spmi:Description>
</spm:hasInformation>
<spm:aboutTaxon>
<tc:TaxonConcept rdf:ID="_tc2">
<tc:nameString xml:lang="en">Dodous bispinosus</tc:nameString>
<tc:hasInformation rdf:resource="urn:lsid:biosci.ohio-state.edu:osuc_concepts:143647"/>
<tc:hasName>
<tn:TaxonName rdf:ID="_tn2">
<tn:rankString xml:lang="en">Species</tn:rankString>
</tn:TaxonName>
</tc:hasName>
</tc:TaxonConcept>
</spm:aboutTaxon>
</spm:SpeciesProfileModel>
<spm:SpeciesProfileModel rdf:ID="spm_3">
<spm:aboutTaxon>
<tc:TaxonConcept rdf:ID="_tc3">
<tc:nameString xml:lang="en">Solenopsis mameti Donisthorpe</tc:nameString>
<tc:hasInformation rdf:resource="urn:lsid:biosci.ohio-state.edu:osuc_concepts:36308"/>
<tc:hasName>
<tn:TaxonName rdf:ID="_tn3">
<tn:rankString xml:lang="en">Species</tn:rankString>
</tn:TaxonName>
</tc:hasName>
</tc:TaxonConcept>
</spm:aboutTaxon>
</spm:SpeciesProfileModel>
<spm:SpeciesProfileModel rdf:ID="spm_4">
<spm:hasInformation>
<spmi:Description rdf:ID="_Description_4_1">
<spm:hasContent>[[ worker ]]. Black, rather shining, mandibles, antennae and legs dirty pale yellow, the
petiole brighter yellow. Sculpture: head and gaster finely reticulate, thorax more distinctly so,
clothed with fine golden pubescence, which is more pronounced on gaster and a few short outstanding
hairs, more being present on gaster.Head oval, somewhat narrower in front than behind, broadest a
little behind eyes, posterior angles rounded,. posterior border excised in middle; mandibles
moderately long, triangular apical tooth sharp and curved, masticatory border armed with a number of
small sharp teeth, the second and fourth being longer than the third; clypeus fairly large, anterior
border excised in middle, posterior border extending in a point between the frontal carinae; frontal
area small but distinct; frontal carinae short, low, fairly wide apart, parallel; eyes large, round,
rather prominent, situated in front of sides of head; antennal 12 - jointed, scape long, extending
beyond posterior border of head, funiculus with first joint longer than third, second joint the
shortest, rest of joints gradually increasing in length and breadth, last joint as long as the two
preceding taken together. Thorax with a neck, longer than broad, constricted in middle, broadest at
humeral angles; pronotum large, transverse, convex, anterior border margined, posterior border
semicircular encircling mesonotum; mesonotum shorter and narrower than pronotum, a little longer
than broad, slightly convex; sutures between pro- and mesonotum and meso- and epinotum well marked,
especially the latter; epinotum with angle between dorsal surface and declivity well marked,
declivity abrupt, somewhat flat, considerably longer than dorsal surface. Petiole narrow, flat,
slightly longer than broad, scale entirely rudimentary; gaster oval, overhanging the petiole,
pointed at apex, fifth segment extending a little beyond the fourth, cloacial opening terminal.
Long. 2.5 mm.</spm:hasContent>
</spmi:Description>
</spm:hasInformation>
<spm:aboutTaxon>
<tc:TaxonConcept rdf:ID="_tc4">
<tc:nameString xml:lang="en">Technomyrmex primroseae</tc:nameString>
<tc:hasInformation rdf:resource="urn:lsid:biosci.ohio-state.edu:osuc_concepts:36839"/>
<tc:hasName>
<tn:TaxonName rdf:ID="_tn4">
<tn:rankString xml:lang="en">Species</tn:rankString>
</tn:TaxonName>
</tc:hasName>
</tc:TaxonConcept>
</spm:aboutTaxon>
</spm:SpeciesProfileModel>
etc...
</rdf:RDF>
</verbatim>
---+++ Example of October 1
* created tbase:Actor to contain publication info referenced from tc:accordingTo in tc:TaxonConcept
* moved aboutTaxon to be 1st child of spm:SpeciesProfileModel
* filtered out treatments without description sections
* still not OWL valid because of use of rdf:resource on ?hasInformation for LSID
<verbatim>
<?xml version="1.0" encoding="UTF-8"?>
<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:tc="http://rs.tdwg.org/ontology/voc/TaxonConcept#" xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#" xmlns:tcom="http://rs.tdwg.org/ontology/voc/Common#" xmlns:tbase="http://rs.tdwg.org/ontology/Base#" xmlns:spmi="http://rs.tdwg.org/ontology/voc/SPMInfoItems#" xmlns:spm="http://rs.tdwg.org/ontology/voc/SpeciesProfileModel#" xmlns:tcore="http://rs.tdwg.org/ontology/Core#" xmlns:tpcit="http://rs.tdwg.org/ontology/voc/PublicationCitation#" xmlns:tn="http://rs.tdwg.org/ontology/voc/TaxonName#" xmlns:xsd="http://www.w3.org/2001/XMLSchema#" xmlns="http://www.owl-ontologies.com/2008/7/1/Ontology1214964455.owl#" xml:base="">
<tbase:Actor rdf:ID="_actor1">
<tcom:publishedInCitation>
<tcom:publicationCitation rdf:ID="_pubcit">
<tpcit:authorship>Donisthorpe, H. S. J. K.</tpcit:authorship>
<tpcit:title>A new Camponotus from Madagascar and a small collection of ants from Mauritius.</tpcit:title>
<tpcit:parentPublicationString>Annals and Magazine of Natural History</tpcit:parentPublicationString>
<tpcit:volume>(12)2</tpcit:volume>
<tpcit:datePublished>1949</tpcit:datePublished>
<tpcit:pages>271-275</tpcit:pages>
</tcom:publicationCitation>
</tcom:publishedInCitation>
</tbase:Actor>
<spm:SpeciesProfileModel rdf:ID="spm_1">
<spm:aboutTaxon>
<tc:TaxonConcept rdf:ID="_tc1">
<tc:nameString xml:lang="en">Camponotus (Tanaemyrmex) gerberti</tc:nameString>
<tc:accordingTo rdf:resource="#actor1"/>
<tc:hasInformation rdf:resource="urn:lsid:biosci.ohio-state.edu:osuc_concepts:135414"/>
<tc:hasName>
<tn:TaxonName rdf:ID="_tn1">
<tn:rankString xml:lang="en">Species</tn:rankString>
</tn:TaxonName>
</tc:hasName>
</tc:TaxonConcept>
</spm:aboutTaxon>
<spm:hasInformation>
<spmi:Description rdf:ID="_Description_1_1">
<spm:hasContent>[[ soldier ]]. Very pale dirty yellow, head reddish yellow, mandibles dark red, teeth, scapes, anterior border of clypeus, and extreme anterior angles of cheeks black, clothed with very sparse outstanding longer and shorter yellow hairs and some fine very short decumbent yellow hairs. Sculpture consisting of very fine reticulations, a little stronger on head.Head large, triangular, considerably broader behind than in front, broadest a little before posterior angles, which are rounded and prominent, posterior border excised, slightly sinuate on each side; mandibles massive, strongly punctured and with transverse ridges, masticatory border armed with six large strong teeth, the apical one being the longest, curved and sharp, the next two longer and sharper than the last three; clypeus large, somewhat flat, carinate and slightly convex on disc, anterior border considerably produced in middle where it is somewhat crenulate, and five large punctures are present along the edge, and smaller punctures, rather wide apart, are scattered over the rest of the surface, posterior border excised in middle; frontal area very faintly defined; frontal carinas rather long, raised, with sharp edges, the rims or edges enclosing the antennal sockets are considerably raised and prominent; a very fine narrow longitudinal ridge takes the place of the frontal furrow and extends between the frontal carinae as far back as their extreme edges; eyes large, broad oval, rather flat, are situated rather high up before the middle of the sides of the head; antenna 12 - jointcd, scape long, thickened at apex, extending beyond the posterior border of head funiculus with all the joints elongate, first slightly shorter than the others, last joint long and pointed. Thorax longer than broad, broadest behind centre of sides of pronotum, somewhat slender behind; pronotum ample. convex, with a short neck, sides margined, considerably widened afterneck, posterior border semicircular; sutures between pro- and mesonotum, and meso- and epinotum fine but distinct; mesonotum longer than broad, shorter than pronotum, somewhat flat on disc, sides rather straight, epinotum longer than mesonotum, sides rather straight, angle between dorsal surface and declivity not marked, dorsal surface longer than declivity. Scale of petiole rather thick at base, anterior surface slightly convex, posterior surface slightly concave, upper surface narrow and forming a rather sharp, ridge; gaster oval, not very voluminous, pointed at apex. Legs fairly long; tibiae prismatic. Long. 18 mm.[[ worker ]] Of the same pale colour as the [[ soldier ]]. but only the extreme anterior angle of clypens and cheeks blackish; the mandibles are pale yellow with the teeth red. The sculpture and hairs are similar.Head long, narrow, broader in front than behind, broadest a little in front of sides of head, narrowed, rather sharply behind eyes to base; teeth to mandibles somewhat more slender and sharper, carinae on clypeus a little more pronounced; eyes more prominent. Thorax narrow and slender; pronotum more narrowed to apex. Scale of petiole of similar shape, but a little narrower; gaster and-legs of similar shape. Long. 10 - 12 mm.</spm:hasContent>
</spmi:Description>
</spm:hasInformation>
</spm:SpeciesProfileModel>
<spm:SpeciesProfileModel rdf:ID="spm_2">
<spm:aboutTaxon>
<tc:TaxonConcept rdf:ID="_tc2">
<tc:nameString xml:lang="en">Dodous bispinosus</tc:nameString>
<tc:accordingTo rdf:resource="#actor1"/>
<tc:hasInformation rdf:resource="urn:lsid:biosci.ohio-state.edu:osuc_concepts:143647"/>
<tc:hasName>
<tn:TaxonName rdf:ID="_tn2">
<tn:rankString xml:lang="en">Species</tn:rankString>
</tn:TaxonName>
</tc:hasName>
</tc:TaxonConcept>
</spm:aboutTaxon>
<spm:hasInformation>
<spmi:Description rdf:ID="_Description_2_1">
<spm:hasContent>
Very like
trispinosus
but without the two shorter spines on the mesonotum. The sculpture is different, and the species is also a little darker in colour.
[[ worker ]]. Head: the sculpture is quite different; the disc is smooth and shining, from the outer part of the smooth surface at sides semicircular carinae run on each side along the cheeks, and from the posterior part a few weaker carinae extend towards base of head, the space between these and the posterior border of head being smooth and shining.Thorax: the ridges on the pronotum are considerably less marked; the mesonotum is smooth and shining and there are no spines present. The ridges on the sides of the thorax are less marked; the dorsal surface and the declivity of the epinotum are smooth and shining.The spines on the pronotum are slightly longer and stronger, and those of the epinotum, being of a different shape, being slightly shorter, and projecting outwards then inwards in an even curve. Long. 5 mm.</spm:hasContent>
</spmi:Description>
</spm:hasInformation>
</spm:SpeciesProfileModel>
<spm:SpeciesProfileModel rdf:ID="spm_3">
<spm:aboutTaxon>
<tc:TaxonConcept rdf:ID="_tc3">
<tc:nameString xml:lang="en">Technomyrmex primroseae</tc:nameString>
<tc:accordingTo rdf:resource="#actor1"/>
<tc:hasInformation rdf:resource="urn:lsid:biosci.ohio-state.edu:osuc_concepts:36839"/>
<tc:hasName>
<tn:TaxonName rdf:ID="_tn3">
<tn:rankString xml:lang="en">Species</tn:rankString>
</tn:TaxonName>
</tc:hasName>
</tc:TaxonConcept>
</spm:aboutTaxon>
<spm:hasInformation>
<spmi:Description rdf:ID="_Description_3_1">
<spm:hasContent>[[ worker ]]. Black, rather shining, mandibles, antennae and legs dirty pale yellow, the petiole brighter yellow. Sculpture: head and gaster finely reticulate, thorax more distinctly so, clothed with fine golden pubescence, which is more pronounced on gaster and a few short outstanding hairs, more being present on gaster.Head oval, somewhat narrower in front than behind, broadest a little behind eyes, posterior angles rounded,. posterior border excised in middle; mandibles moderately long, triangular apical tooth sharp and curved, masticatory border armed with a number of small sharp teeth, the second and fourth being longer than the third; clypeus fairly large, anterior border excised in middle, posterior border extending in a point between the frontal carinae; frontal area small but distinct; frontal carinae short, low, fairly wide apart, parallel; eyes large, round, rather prominent, situated in front of sides of head; antennal 12 - jointed, scape long, extending beyond posterior border of head, funiculus with first joint longer than third, second joint the shortest, rest of joints gradually increasing in length and breadth, last joint as long as the two preceding taken together. Thorax with a neck, longer than broad, constricted in middle, broadest at humeral angles; pronotum large, transverse, convex, anterior border margined, posterior border semicircular encircling mesonotum; mesonotum shorter and narrower than pronotum, a little longer than broad, slightly convex; sutures between pro- and mesonotum and meso- and epinotum well marked, especially the latter; epinotum with angle between dorsal surface and declivity well marked, declivity abrupt, somewhat flat, considerably longer than dorsal surface. Petiole narrow, flat, slightly longer than broad, scale entirely rudimentary; gaster oval, overhanging the petiole, pointed at apex, fifth segment extending a little beyond the fourth, cloacial opening terminal. Long. 2.5 mm.</spm:hasContent>
</spmi:Description>
</spm:hasInformation>
</spm:SpeciesProfileModel>
</rdf:RDF>
</verbatim>
---++ Example of October 10
[[http://plazi.cs.umb.edu:8080/exist/rest/db/taxonx_docs/5959_tx1.xml?_xsl=styles/tx2spm.xsl][Click for the *current* result (i.e., not necessarily the same as the example below) of Plazi's REST service]] applied to the TaxonX version of Plazi document 5959. This may be slightly different from the example, which was fetched on October 10.
[[http://www.w3.org/RDF/Validator/ARPServlet?URI=http://plazi.cs.umb.edu:8080/exist/rest/db/taxonx_docs/5959_tx1.xml?_xsl=styles/tx2spm.xsl&PARSE=Parse+URI%3A+&TRIPLES_AND_GRAPH=PRINT_BOTH&FORMAT=PNG_EMBED][Click for RDF validation, triples and graph of the *current* version (i.e., not necessarily the same as the example below) at the W3C online RDF validator]]
<verbatim>
<?xml version="1.0" encoding="UTF-8"?>
<rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#"
xmlns:tc="http://rs.tdwg.org/ontology/voc/TaxonConcept#" xmlns:rdfs="http://www.w3.org/2000/01/rdf-schema#"
xmlns:tcom="http://rs.tdwg.org/ontology/voc/Common#" xmlns:tbase="http://rs.tdwg.org/ontology/Base#"
xmlns:spmi="http://rs.tdwg.org/ontology/voc/SPMInfoItems#"
xmlns:spm="http://rs.tdwg.org/ontology/voc/SpeciesProfileModel#" xmlns:tcore="http://rs.tdwg.org/ontology/Core#"
xmlns:tpcit="http://rs.tdwg.org/ontology/voc/PublicationCitation#"
xmlns:tn="http://rs.tdwg.org/ontology/voc/TaxonName#" xmlns:xsd="http://www.w3.org/2001/XMLSchema#"
xmlns="http://www.owl-ontologies.com/2008/7/1/Ontology1214964455.owl#" xml:base="">
<tbase:Actor rdf:ID="_actor1">
<tcom:publicationCitation rdf:ID="_pubcit">
<tpcit:authorship>Donisthorpe, H. S. J. K.</tpcit:authorship>
<tpcit:title>A new Camponotus from Madagascar and a small collection of ants from Mauritius.</tpcit:title>
<tpcit:parentPublicationString>Annals and Magazine of Natural History</tpcit:parentPublicationString>
<tpcit:volume>(12)2</tpcit:volume>
<tpcit:datePublished>1949</tpcit:datePublished>
<tpcit:pages>271-275</tpcit:pages>
</tcom:publicationCitation>
</tbase:Actor>
<spm:SpeciesProfileModel rdf:ID="_spm_1">
<spm:aboutTaxon>
<tc:TaxonConcept rdf:about="urn:lsid:biosci.ohio-state.edu:osuc_concepts:135414">
<tc:nameString xml:lang="en">Camponotus (Tanaemyrmex) gerberti</tc:nameString>
<tc:accordingTo rdf:resource="#_actor1"/>
<tc:hasName>
<tn:TaxonName rdf:ID="_tn1">
<tn:rankString xml:lang="en">Species</tn:rankString>
</tn:TaxonName>
</tc:hasName>
</tc:TaxonConcept>
</spm:aboutTaxon>
<spm:hasInformation>
<spmi:Description rdf:ID="_Description_1_1">
<spm:hasContent>[[ soldier ]]. Very pale dirty yellow, head reddish yellow, mandibles dark red, teeth,
scapes, anterior border of clypeus, and extreme anterior angles of cheeks black, clothed with very
sparse outstanding longer and shorter yellow hairs and some fine very short decumbent yellow hairs.
Sculpture consisting of very fine reticulations, a little stronger on head.Head large, triangular,
considerably broader behind than in front, broadest a little before posterior angles, which are
rounded and prominent, posterior border excised, slightly sinuate on each side; mandibles massive,
strongly punctured and with transverse ridges, masticatory border armed with six large strong teeth,
the apical one being the longest, curved and sharp, the next two longer and sharper than the last
three; clypeus large, somewhat flat, carinate and slightly convex on disc, anterior border
considerably produced in middle where it is somewhat crenulate, and five large punctures are present
along the edge, and smaller punctures, rather wide apart, are scattered over the rest of the
surface, posterior border excised in middle; frontal area very faintly defined; frontal carinas
rather long, raised, with sharp edges, the rims or edges enclosing the antennal sockets are
considerably raised and prominent; a very fine narrow longitudinal ridge takes the place of the
frontal furrow and extends between the frontal carinae as far back as their extreme edges; eyes
large, broad oval, rather flat, are situated rather high up before the middle of the sides of the
head; antenna 12 - jointcd, scape long, thickened at apex, extending beyond the posterior border of
head funiculus with all the joints elongate, first slightly shorter than the others, last joint long
and pointed. Thorax longer than broad, broadest behind centre of sides of pronotum, somewhat slender
behind; pronotum ample. convex, with a short neck, sides margined, considerably widened afterneck,
posterior border semicircular; sutures between pro- and mesonotum, and meso- and epinotum fine but
distinct; mesonotum longer than broad, shorter than pronotum, somewhat flat on disc, sides rather
straight, epinotum longer than mesonotum, sides rather straight, angle between dorsal surface and
declivity not marked, dorsal surface longer than declivity. Scale of petiole rather thick at base,
anterior surface slightly convex, posterior surface slightly concave, upper surface narrow and
forming a rather sharp, ridge; gaster oval, not very voluminous, pointed at apex. Legs fairly long;
tibiae prismatic. Long. 18 mm.[[ worker ]] Of the same pale colour as the [[ soldier ]]. but only
the extreme anterior angle of clypens and cheeks blackish; the mandibles are pale yellow with the
teeth red. The sculpture and hairs are similar.Head long, narrow, broader in front than behind,
broadest a little in front of sides of head, narrowed, rather sharply behind eyes to base; teeth to
mandibles somewhat more slender and sharper, carinae on clypeus a little more pronounced; eyes more
prominent. Thorax narrow and slender; pronotum more narrowed to apex. Scale of petiole of similar
shape, but a little narrower; gaster and-legs of similar shape. Long. 10 - 12 mm.</spm:hasContent>
</spmi:Description>
</spm:hasInformation>
</spm:SpeciesProfileModel>
<spm:SpeciesProfileModel rdf:ID="_spm_2">
<spm:aboutTaxon>
<tc:TaxonConcept rdf:about="urn:lsid:biosci.ohio-state.edu:osuc_concepts:143647">
<tc:nameString xml:lang="en">Dodous bispinosus</tc:nameString>
<tc:accordingTo rdf:resource="#_actor1"/>
<tc:hasName>
<tn:TaxonName rdf:ID="_tn2">
<tn:rankString xml:lang="en">Species</tn:rankString>
</tn:TaxonName>
</tc:hasName>
</tc:TaxonConcept>
</spm:aboutTaxon>
<spm:hasInformation>
<spmi:Description rdf:ID="_Description_2_1">
<spm:hasContent> Very like trispinosus but without the two shorter spines on the mesonotum. The
sculpture is different, and the species is also a little darker in colour. [[ worker ]]. Head: the
sculpture is quite different; the disc is smooth and shining, from the outer part of the smooth
surface at sides semicircular carinae run on each side along the cheeks, and from the posterior part
a few weaker carinae extend towards base of head, the space between these and the posterior border
of head being smooth and shining.Thorax: the ridges on the pronotum are considerably less marked;
the mesonotum is smooth and shining and there are no spines present. The ridges on the sides of the
thorax are less marked; the dorsal surface and the declivity of the epinotum are smooth and
shining.The spines on the pronotum are slightly longer and stronger, and those of the epinotum,
being of a different shape, being slightly shorter, and projecting outwards then inwards in an even
curve. Long. 5 mm.</spm:hasContent>
</spmi:Description>
</spm:hasInformation>
</spm:SpeciesProfileModel>
</rdf:RDF>
</verbatim>
-- Main.TerryCatapano - 10 Oct 2008